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AG-G [bacteria]

Add MS 86695 : 1992-1998

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  • Title:
    AG-G [bacteria]
  • Collection Area: Western Manuscripts
  • Reference: Add MS 86695
  • Creation Date: 1992-1998
  • Extent and Access:
    Extent: 4 sub-folders and 1 loose item

  • Language: English
  • Contents and Scope:
    Contents:

    Some items are undated.

    Folder marked 'Codon bias in E. coli genes "agg", "lenc", "agg2"'

    • Letter to Maynard Smith from Paul M. Sharp; 15 Nov 1994. Attached are notes by Maynard Smith on AG-G avoidance.
    • Computer printout for runs of "lenc"; Oct 1994.
    • Computer printout for runs of "agg2"; Oct 1994.
    • Computer printout listing for "agg5"; 21 Feb 1995.
    • Computer printout for runs of "agg" (run 6); 15 Nov 1994?
    • Computer printout listing and check for "agg2".
    • Handwritten notes and figures, computer generated graphs.
    • Handwritten notes and computer printouts relating to 'avoidance of G-G?'
    • Handwritten notes and computer printouts relating to 'can we check the avoidance of GAGG and AAGG'.
    • Computer printouts for 'names.hi' and 'names.lo'.

    Loose item

    • Letter to Maynard Smith from Gilean McVean; 25 May 1998. Attached is the manuscript for 'The avoidance of out-of-frame stop codon in bacteria' by Gilean A.T. McVean and Gregory D. D. Hurst.

    Folder marked '3rd site STOP CODONS T-AG etc Oct 97'

    • Handwritten notes and computer printouts relating to 'avoidance of TAG'; 8 Oct 1997.
    • Handwritten notes and computer printouts relating to 'programs'; 8 Oct 1997.
    • Handwritten notes sent to Greg Hurst; Oct 1997.
    • Handwritten notes and computer printouts relating to 'avoidance of CCTGG and CTTGG'; 27 Nov 1997.
    • Handwritten notes for Gil McVean relating to 'In e.coli is TA-G avoided?'; 27 Nov 1997 (two copies).
    • Handwritten notes and computer printouts relating to 'AGG out of frame'; 2 Dec 1997.
    • Handwritten notes and computer printouts relating to 'VSPR and CT-AG avoidance'; 26 Nov 1997?
    • Photocopy of data table and article relating to Bacillus.
    • Gilean McVean and Gregory D. D. Hurst, 'The avoidance of out-of-frame stop codon in bacteria'.
    • Handwritten notes attached to Ashok Bhagwat and Michael McClelland, 'DNA mismatch correction by Very Short Patch repair may have altered the abundance of oligonucleotides in the E.coli genome', Nucleic Acids Research , 20 (1992), 1663-8
    • Letter to the Editor of Journal of Molecular Evolution from Adam Eyre-Walker, 'Does Very Short Patch (VSP) repair efficiency vary in relation to gene expression levels?', Journal of Molecular Evolution , 40 (1995), 705-6.
    • J. Maynard Smith and N.H. Smith, 'Site-specific codon bias in bacteria', Genetics , 142 (1996), 1037-1043.

    Folder marked 'Stop codons out of frame'.

    • Computer printout for "agg3"; 17 Nov 1994.
    • Computer printout to '"agg3" – modified and runs'; 30 Nov 1994.
    • Handwritten notes entitled 'conclusion 6'; 1 Dec 1994.
    • Handwritten notes relating to 'stop codons out of frame in e.coli'; 20 Feb 1995.
    • Computer printout relating to 'Avoidance of TA-A TA-G'; 1 Dec 1994?
    • Handwritten notes relating to low-expressed genes; 1 Dec 1994?
    • Computer printout for "agg2"; 5 Dec 1994?
    • Computer printout for '"agg2" Avoidance of T-AA in ecoli'; 5 Dec 1994?
    • Handwritten notes relating to 'stop codon out of frame in e.coli'; 12 Dec 1994?
    • Handwritten notes relating to 'Is T avoided before AA?'
    • Handwritten note about complements of AG-G.

    Folder marked 'Bacillus – ag.g etc'.

    • Computer printouts for 'agg3'; 11 Nov 1994.
    • Handwritten summary relating to bacillus, includes computer printouts.

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