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Add MS 86696

Record Id:
040-000538168
Hierarchy Root Ancestor Record Id:
032-000375067
MDARK:
ark:/81055/vdc_100000000274.0x0000df
LARK:
SLARK:
Format:
ISAD(G)
Reference (shelfmark):
Add MS 86696
Title:
Codon Bias
Scope & Content:

Some items are undated.

Folder marked 'Codon bias in Neisseria'.

  • Computer printout for 'cai'; 27 Jan 1994.
  • Computer listing for "cai"; 27 Jan 1994.
  • Computer printout for "coduse"; 16 Jan 1995.
  • Computer printout for '"coduse" on reca'; 16 Jan 1995.
  • Computer printout for 'coduse' on neiss.shik; 16 Jan 1995.
  • Computer printout for a run of 'coduse' on neiss.por; 17 Jan 1995.
  • Handwritten notes on "coduse" and "cai"; Apr 1995.
  • Handwritten figures relating to neisseria – 3rd site divergence; Jun 1995.
  • Handwritten list of programs; 20 Dec 1995. Includes notes about each program.
  • Handwritten notes relating to codon adaptation index. Attached to Paul M. Sharp and Wen-Hsiung Li, 'The codon adaptation index: a measure of directional synonymous codon usage bias, and its potential applications', Nucleid Acids Research, 15 (1987), 1281-6.
  • Handwritten figures for 'codon usage in E.coli'.
  • Article by unknown author 'Cloned N. Gonorrhoea genes and codon usage', Clinical Microbiological Review, 2 (1989), S93-S95.

Folder marked 'Bias programs "bias" "bione"'.

  • Computer printout for 'bias' run 2; 1 Aug 1994.
  • Computer printout for 'bias' run 11; 4 Aug 1994.
  • Computer printout for 'bione' run 1A; 5 Aug 1994.
  • Computer printout for 'bias1' run 1; 14 Aug 1994.
  • Computer printout for 'bias1'; 15 Aug 1994.
  • Handwritten notes relating to 'program "bias1" and "bias2".
  • Computer printout for '"bias2" and runs'.
  • Handwritten table of data.
  • Handwritten notes relating to 'checking "bione" against Bulmer's theory'.
  • Computer printout for 'bione' run 3.
  • Computer printout for 'bione' run 1.
  • Computer printout for 'bione' run 2.
  • Handwritten notes on 'bias' run 14.
  • Computer printout for 'bias' run 15.

Folder marked 'Codon bias in Hlc gene, TAR gene, program "hlcbias" and codon bias in Ecoli/salmonella genes at changed and unchanged sites Program "bias"'

  • Computer printouts of DNA sequences; 26 Aug 1992.
  • Computer printout for '"colbias" listing and runs'.
  • Handwritten notes relating to 'codon bias at synonymous and substituted codons'.
  • Computer printout for 'cslbias'.
  • Workings out and photocopied hand drawn graph.
  • Computer printouts for 'bias'.
  • Computer printout for 'bias' on genes differing by decrease 20% nucleotides.
  • Computer printout for "bias" on genes with nt% difference under 10%
  • Handwritten data tables on 'difference %'
  • Computer printout of 'bias' on genes with 10-15% difference.
  • Computer printout for runs of 'hlcbias' on gene TAR.

Folder marked 'Codon bias in infinite P & Pn. Brought forth a mouse!'

  • Computer printout for 'popbias1'; 5 Oct 1995.
  • Computer printout for 'popbias 2'; 6 Oc 1995.
  • Handwritten notes on 'where we stand on codon bias'.
  • Handwritten notes relating to mutations in codon bias.

Folder marked 'Reverse bias or bias if varying degree?'

  • Handwritten notes on reverse bias, two copies, one photocopy; 23 Oct 1995.
Collection Area:
Western Manuscripts
Project / Collection:
Additional Manuscripts
Hierarchy Record Ids:
032-000375067
036-000375071
040-000538168
Is part of:
Add MS 86569-86840 : John Maynard Smith Archive
Add MS 86597-86830 : Subject files

 

Add MS 86696 : Codon Bias
Hierarchy:
032-000375067[0003]/036-000375071[0102]/040-000538168
Container:
View / search within Archive / Collection: Add MS 86569-86840
Record Type (Level):
File
Extent:
5 sub-folders
Digitised Content:
Languages:
English
Scripts:
Latin
Start Date:
1987
End Date:
1995
Date Range:
1987-1995
Era:
CE
Access:

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User Conditions:
Material Type:
Archives and Manuscripts
Legal Status:
Not Public Record(s)